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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST004751
species:
Oryza sativa
miRNA family:
MIR827
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTAGATGACCATCAGCAAACA
miRNA*
TTTTGTTGCTGGTCATCTAGCT
mismatches:
1
bulges:
1
View larger
pre-miRNA
ATTATTGCTAGCCATGAACCTG
TTTTGTTGCTGGTCATCTAGCT
ACCCGTGCATGCCTGGAGATTGGAGAATAATCGTGACGATGCAGCAGTCGGCTTCT
TGGCTGTTGGGCACGCGTGG
TTAGATGACCATCAGCAAACA
AGTTCGTGGGACGCATGCA
dot-bracket secondary structure
.....(((...((((((((.((
(((.((((.(((((((((((((
((.(((((..(((.((((.((((......((((...)))).......)))).))))
.)))......))))).))))
))))))))))).)))))))))
.))))))))...)))....
SIMILARITIES
miRBase
osa-MIR827b
:
4e-63
PMRD
osa-miR827b
:
4e-63
microPC
miR827
:
0.000008
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
Source sequences
download this record
deep sequencing data evidence